Managing Risk in Cutting-Edge mRNA Therapeutics

Drug development, regardless of the modality, invariably involves some level of risk. As mRNA therapeutics advance, they too will face such risks, including some analogous to those posed by other modalities and some unique to mRNA. Manufacturing processes must be robust, efficient, scalable, and readily monitored and controlled — not an insignificant challenge, particularly given the drive to establish them quickly. BIOVECTRA has explicitly taken steps to reduce the risks associated with mRNA development and manufacturing, including using automation combined with a quality-by-design approach for efficient and effective process optimization, development of in-house analytical methods, and constant monitoring of technology advances and the evolution of regulatory guidance.

mRNA: Highly Promising Opportunities, but not Risk-Free

With the robust efforts across the industry to rapidly and efficiently advance mRNA therapeutics, a broad range of risks must be considered and mitigated. Drug developers and their manufacturing partners are driven to develop robust, efficient, reliable, and scalable manufacturing processes in the context of competitive market pressures. Regulatory guidelines for evaluation of the safety, quality, and efficacy of mRNA therapeutics and vaccines are evolving, with draft guidances likely to become formalized in the near future.

Comprehensive Risk-Management Approach at BIOVECTRA

Risk management at BIOVECTRA begins with a quality-by-design (QbD) approach to ensure deep understanding of critical process parameters (CPPs) and critical product quality attributes (CQAs). Manufacturing processes are then designed based on these principles.

Another component of BIOVECTRA’s risk-management approach involves relying on a team of experts with a broad array of knowledge and experience. In addition to quality assurance, engineering, analytics, process development, and manufacturing, science and technology groups participate in risk assessments, applying their diverse perspectives to ensure the best possible process designs.

A third element of the BIOVECTRA risk-management strategy considers, through project management exercises, what risks are associated with advancing our internal platforms and/or client projects.

Underlying these three aspects of our approach to managing the risk of mRNA manufacturing is the implementation of process automation solutions wherever feasible in the new production facility, including the use of process analytical technologies (PATs) to monitor CPPs.

Balancing Innovation and Risk with Automation

Automation has been proven in other industries to result in more robust processes and to facilitate more streamlined program advancement. For mRNA projects, automation also has the potential to reduce development times, allowing clients to move from preclinical R&D to clinical trials efficiently, which is highly desirable as drug developers race to be the first to market with these next-generation therapies.

Indeed, given that mRNA synthesis typically requires the same process conditions and reagents (e.g., nucleotides, enzymes, DNA substrate) with only the genetic sequence of the DNA varying, it can be straightforward to automate. A bioreactor with inline PAT providing feedback on the temperature, pH, conductivity, and other factors allows careful control of the process. Purification can then be performed via automated filtration followed by chromatography with real-time fraction UV analysis, followed by ultrafiltration, concentration, and buffer exchange.

The pressure for biopharma companies to invest in artificial intelligence, robotics, and digitalization to improve process performance is likely to continue to rise. BIOVECTRA believes that the maturation of the mRNA field (and the pDNA field by association) creates opportunities for leading-edge manufacturers to leverage these technologies, as well as continuous processing. AI can help to predict process outcomes and lead to safer, more efficient, and more productive processes.

One solution we are exploring is the digital twin, in which robotics sensors and AI allow collection of real-time process data that is then used to generate a simulation of that specific process. The simulation is then used to analyze process performance and identify areas for improvement and to predict potential issues before they occur. For mRNA, digital twins could be deployed for processes, such as microbial fermentation to generate pDNA, in vitro transcription to produce mRNA, and formulation.

A True One-Stop-Shop Provider

The key to success for contract development and manufacturing organizations (CDMOs) is to listen carefully to their customers regarding their needs and to then create the optimal solutions that address those pain points. One of the biggest issues for mRNA developers today is the fragmented nature of outsourcing services. Often, developers must work with multiple CDMOs that only support one step of the process — pDNA, mRNA drug substance, or mRNA–lipid nanoparticle (LNP) drug product.

Some larger companies have attempted to address this issue by acquiring smaller CDMOs that specialize in each of these areas. However, these acquired businesses often remain as separate companies in different locations, each with its own team. Material must be shipped from one site to the other and be handled by an entirely different team, which can create the same kind of inefficiencies as tech transfers between different CDMOs.

At BIOVECTRA, all aspects of mRNA–LNP manufacturing exist at one facility under one roof. The entire GMP manufacturing train is located in a single building, and client projects from pDNA production to mRNA–LNP fill/finish are supported by the same team of experts. Internal production of pDNA also simplifies the supply chain and gives us greater control over timelines. We have also overcome the ubiquitous bottleneck associated with limited fill/finish capacity by establishing in-house capabilities.

Emphasis on Effective Process Development

Establishing robust processes requires a comprehensive approach to process development. BIOVECTRA has always placed an emphasis on not only creating strong teams but supporting them with great manufacturing science and technology to enable the seamless advancement of programs from process development to GMP manufacturing. This approach positions us to evaluate and implement comprehensive process solutions, including new automation technologies that accelerate process optimization and reduce risks associated with commercial production.

As BIOVECTRA moves to automated approaches, we will continue to rely on a QbD approach. Design-of-experiment (DoE) principles will continue to guide process development efforts, with knowledge about key process parameters that impact impurity generation and product yield used as key inputs into AI algorithms that perform predictive analysis.

Optimizing Scale

BIOVECTRA has constructed a brand-new facility that will come on stream for GMP manufacturing in 2023. We have scales from shake flasks and smaller lab-scale equipment up to the 1,000-liter scale for pDNA and the 30-liter scale for mRNA drug substance and complementary scales for mRNA–LNP drug product. Two separate fill/finish lines provide capacity for over 20,000 vials per day each, which equates to nearly 70 million doses per year of a typical mRNA vaccine.

The offering of sub-liter to 30-liter scales for mRNA drug substance and complementary scales for mRNA–LNP drug product manufacturing was selected on the basis of expected demand for these materials and the nature of the processes involved. Developers of mRNA products are driving extremely hard to improve translational efficiency and reduce dose sizes (e.g., through targeted delivery) to reduce the cost of these drugs and vaccines. In vitro transcription reactions, meanwhile, are typically completed in just three hours, allowing numerous runs to be completed per day. In addition, this type of smaller batch-based approach reduces risk, given the expense of the raw materials.

If there is a need for production of mRNA and mRNA–LNP products in larger volumes, BIOVECTRA is well-positioned to respond. We perform fermentation reactions at up to the 17,000-liter scale — the largest capacity in North America. Indeed, we have extensive experience overcoming scalability challenges for both biologics and small molecule manufacturing, experience that will translate well to mRNA and mRNA–LNP production.

Monitoring Advances in Delivery Technologies

While mRNA technology has been under development for several decades, there are still many opportunities for improvement. As a CDMO offering end-to-end mRNA therapeutic and vaccine services, it is essential that BIOVECTRA maintain awareness of evolving technologies in the field and be prepared to implement new production processes leveraging novel technologies.

One of the biggest areas of innovation today revolves around targeted delivery of mRNA to specific cells and/or tissues. The goal is to find solutions that will eliminate safety concerns around potential negative responses to PEGylated lipids and other components in LNPs and increase the efficiency of delivery, thus reducing the required dosage level.

Potential solutions closely followed at BIOVECTRA include the linkage of antibodies to mRNA–LNPs that can bind to specific receptors on the surfaces of specific cells (similar to antibody–drug conjugates) and the use of alternative forms of RNA, such as circular RNA, that can only be expressed in certain cells or tissue. Other efforts focus on increasing the ability of LNPs to stabilize mRNA, thus prolonging the time the active is present in the body.

With decades of experience in producing many types of biologic and small molecule drug substances and drug products, BIOVECTRA is well equipped to manufacture all different types of RNA modalities formulated in different delivery systems. We can express a large spectrum of biomolecules, perform cross-linking reactions with small molecules, and synthesize a wide range of lipids.

Tackling Analytical Challenges to Ensure Quality

The complexity of mRNA processes contributes to the manufacturing risks, which in part relate to challenges with assaying a wide variety of impurities in addition to fully characterizing the mRNA molecules themselves. Current regulatory guidances emphasize ensuring consistent, high quality of mRNA products, which can be assessed using several techniques, including high-performance liquid chromatography, mass spectrometry, gel electrophoresis, and sequencing techniques, among others. In addition to thorough characterization of the mRNA active, detailed impurity profiling, sterility analysis, and stability determination must be completed.

The in vitro transcription reaction followed by various enzymatic reactions and/or capping reactions creates the need to understand the capping, poly-A tail, and other aspects of mRNA drug substances, as well as the various product-and process-related impurities that can be generated. Many of the methods required are unique to mRNA.

BIOVECTRA’s quality analytics team has developed over 50 in-house methods for determining the structure and quality of pDNA, mRNA, and mRNA–LNP products. These assays are platform driven to the extent possible, with detailed protocols in place to complete any aspects that must be customized for a specific mRNA candidate. Importantly, this work is performed within a robust and proven quality system that has a successful track record with regard to regulatory inspections, including by the U.S. FDA, Health Canada, and Japan’s PMDA.

Staying Abreast of Evolving Regulatory Guidance

The most up-to-date mRNA guidance comes from the U.S. FDA, with the latest update occurring in March 2023. Further updates from the FDA are anticipated in the near future. In addition, the WHO — as well as potentially other national regulatory agencies — is expected to issue new mRNA-specific guidelines, possibly before the end of 2023. The U.S. Pharmacopeia has published a second edition of its guidelines for mRNA analytical methods.

At BIOVECTRA, we recognize that mRNA is a new modality with limited real-world data available. Consequently, it is essential during clinical trials of new mRNA candidates to let the data speak for themselves. As more data are generated, agencies will continue to update guidances and share that knowledge.

BIOVECTRA has an internal regulatory group that stays on top of the latest trends and supports clients in their filing processes. They also understand that our customers are at the forefront of the industry, interfacing with the regulatory agencies and consistently reoptimizing their products based on real-time outcomes of animal studies and clinical trials. By partnering with our clients and gathering their feedback, BIOVECTRA is able to optimize and adjust our processes. In fact, interacting with many different clients gives us many different perspectives and allows us to stay on top of potency, safety aspects, and other regulatory concerns, ensuring that we pursue all activities in a compliant manner.

Research- and GMP-Grade Products

The risks associated with moving from preclinical to clinical to commercial stages for any drug candidate can be magnified if raw materials are not taken into consideration from the outset. One way to reduce that risk is to use phase-appropriate raw materials that are produced using the same processes regardless of whether they are research-grade or GMP-compliant.

To that end, BIOVECTRA offers preclinical materials suitable for animal and toxicology studies and GMP-grade materials for use in clinical trials and commercial production. The only difference between these materials is the additional quality documentation, such as the use of validated analytical methods and validated processes. It should be noted, however, that BIOVECTRA does not offer high-throughput screening services for identification of optimal mRNA sequences. We largely produce GMP material for clients that have selected their lead candidate and are looking for the ideal partner to help them move rapidly move beyond the preclinical stage.

Strategic Approach to Personalized Medicine Manufacturing

The success of the COVID-19 mRNA vaccines has drawn much attention to their potential for the prevention of a wide variety of infectious diseases. Many companies are also focused on the development of mRNA-based cancer vaccines, which by their nature are personalized medicines. Such autologous treatments are much more complex in terms of batch records, traceability, quality control, and other manufacturing aspects compared with traditional vaccines.

BIOVECTRA recognizes the challenges associated with advancing such personalized mRNA products. Automation will be essential to minimizing the timeline from patient biopsy to treatment while ensuring traceability and documentation. BIOVECTRA anticipates implementing digitalization and electronic batch records in the very near future. We are also moving toward digitalization and barcoding of samples to greatly increase both traceability and safety. We are looking forward to supporting clients in that personalized medicine space through these improvements.

A Concerted QbD Approach to Development and Manufacturing of Nucleic Acid Therapies

With mRNA therapeutics and vaccines receiving high-profile success, the development space for mRNA products is undergoing rapid and unprecedented growth. However, this sudden surge faces  headwinds owing to the scarcity of contract development and manufacturing organizations (CDMOs) specializing in mRNA production. Even among CDMOs offering mRNA manufacturing services, few providers possess the necessary expertise, capabilities, and scalable platform processes to rapidly manufacture mRNA at high and consistent levels of quality across phases and manufacturing scales. Program success may depend on the application of a concerted quality-by-design (QbD) approach, ensuring that the mRNA is optimized for consistency from small-scale inception and research to large-scale, high-quality GMP manufacturing. Quality and efficiency are established across scales and phases by partnering with a true end-to-end provider able to support all of a program’s needs, from optimization of the RNA sequence to GMP production.

Vernal Biosciences’ Concerted Approach

Taking a concerted quality-by-design (QbD) approach to the development and manufacturing of RNA means producing research-use-only (RUO) materials while keeping the end goal of clinical-grade production in mind.  This can be achieved by adopting manufacturing operations that will ultimately be compatible with large-scale production. Along with this QbD approach and the expertise of veterans in the sector, one of Vernal Biosciences’ strengths is the ability to produce high-purity mRNA and lipid nanoparticles (LNPs) with the shortest turnaround time in the industry partnered with established platform technologies and robust processes. Additionally, the quality metrics established for small-scale production are maintained through large-scale production, ensuring proper product quality approval and consistency from drug discovery research all the way through clinical and commercial manufacturing.

Phase-Appropriate Product Grades

At Vernal Biosciences, our unique QbD approach is reflected in the different project types and product grades produced by the company. Through our custom RUO products and services, Vernal provides turnkey solutions to support clients’ early research and discovery needs for mRNA and LNP testing in cell and animal studies.

For clients moving beyond early-stage R&D and RUO materials, Vernal Biosciences offers mRNA and LNP–mRNA made under GMP-Principle and GMP. Products made under the GMP-Principle are typically suitable for IND-enabling GLP tox studies, are produced using processes that mirror those used for RUO products, and are directly representative of the processes scaled for GMP products, even though not typically made in a GMP clean room. On the other hand, full GMP products are intended for first-in-human use and are produced in full compliance with GMP requirements and accompanied by comprehensive documentation and a GMP data package. GMP and GMP-Principle products are produced under oversight of manufacturing quality that is based on phase-appropriate quality systems and risk-management approaches.

A similar approach is applied with respect to the generation of LNP-formulated RNA products. At the RUO level, Vernal currently generates RNA drug substances encapsulated in LNPs for use in toxicology and other preclinical studies. Notably, RUO-grade mRNA can be generated through in vitro transcription (IVT) at a relatively large scale in terms of laboratory quantities: as much as 500 mg.  Vernal anticipates offering GMP mRNA and LNP formulation services in 2023 and expects to further expand operations with a commercial-ready sterile fill/finish offering at a second CDMO site in 2024.

Platform Process with Baseline Quality Targets

Vernal Biosciences’ platform processes for mRNA and LNP–mRNA manufacturing leverage a consistent set of processes and reagents that enable plug-and-play, turnkey solutions. Customers provide the sequence information and the scale needed, while Vernal rapidly and reliably produces RUO materials. Concurrently, RUO design will be generated with efficient scale-up to GMP processes that mirror those used for RUO. This end-to-end process design eliminates many of the tech transfer and proof-of-concept challenges faced when changing CDMO partners as the life cycle of drug development advances. Confidence in our platform processes and manufacturing expertise is based on our experience in manufacturing hundreds of batches of RNA and LNP formulations.

The establishment of platform processes at the RUO stage begins with codon sequence optimization to enhance protein expression. This process factors in accumulated knowledge, evidence, and studies on the effects of different DNA template elements on IVT and translation efficiency. This enables the establishment of critical quality attributes (CQAs), such as the characteristics of the pilot RNA batches generated via IVT and the type and level of certain product-related impurities, which can be determined using capillary electrophoresis (CE). After the subsequent capping reaction (for which Vernal Biosciences uses enzymes rather than other proprietary capping agents) and purification, CE is repeated to confirm the purity of the final capped mRNA product. For special projects that involve other types of RNA, such as structured or circular RNA, additional CQAs will be established and analytical methods will be developed, tested, and performed for every production run.  


Determination of CQAs at the research-grade product level establishes a baseline target for product quality and RNA integrity. Once that is achieved at the drug discovery stage or for RUO materials, a quality target is established, which becomes the initial goal during scale-up. Additional CQAs are layered on to support the quality target product profile (QTPP) for each specific product. 

Process Development and Optimization Begin at the Research Stage

At the RUO stage, it is possible to use the same or similar platform processes for different RNA projects, as these products are typically produced at small scale for RUO. However, differences in RNA sequences, including length, GC (guanine–cytosine) content, and other factors, can have significant impacts on process efficiency and ultimately on manufacturing costs and timelines. As a result, process development and optimization become critical to adapting the platform processes used for RUO into efficient, scaled-up processes suitable for GMP-Principle and GMP products.

Process optimization should be a focus as early in the project timeline as possible. At Vernal Biosciences, the first step is to screen the RNA sequence to verify that it does not contain motifs that might present issues. However, understanding about how different constructs will behave during IVT is still evolving. When odd behavior is observed, Vernal develops hypotheses regarding the cause of the behavior, such as the presence of repetitive sequences or DNA–RNA associations.

Once a hypothesis has been established, a series of small-scale trial runs is performed to determine which modifications improve the productivity or product-related purity profile, which can enrich our existing knowledge base and enable better prediction of the construct’s behavior for future projects. Additionally, if a product must be shipped from one facility to another, the logistics of storage, as well as the freezing and thawing process, must also undergo evaluation.     

Vernal’s platform processes are designed from the start both to require little to no modifications to produce RUO materials and to transition seamlessly, with some modifications, into GMP manufacturing. In most cases, the types of adaptations required as a process advances to GMP can be anticipated on the basis of the information gathered during the RUO phase, such as transitioning to a larger bioreactor, extending the reaction time to increase productivity and yield, and shortening the reaction time to avoid overwhelming the chromatography column. 

For many CDMOs, projects are brought in at the later development stages, with feasibility work completed and important information generated elsewhere. As a result, processes are not necessarily designed to fit the CDMO’s production platforms (if platforms are available), leading to the need for extensive adaptation through an elaborate technology transfer process. At Vernal Biosciences, our end-to-end capabilities span early- and late-stage development, as well as activities from production of working cell bank, plasmid DNA, and RNA drug substance to LNP formulation and filling into vials, which allows a high level of communication between the research and GMP operations groups.

Scaling Considered from the Outset

Despite extensive optimization efforts, some changes in process performance can be expected during scale-up. When developing RNA drug substance and final product (LNP–mRNA) manufacturing processes, it is crucial to know which parameters will be impacted by scale and to plan accordingly. 

Scale-up can be achieved in two ways: increasing bioreactor volumes (using a bigger reactor and more raw materials) or improving productivity. A more productive IVT reaction yields a higher quantity of RNA material per unit volume. Increasing productivity is a focus for Vernal’s RNA Science team, while increasing scale by moving to bigger bioreactors is an emphasis for later-stage products. Once a process at a very small scale has been optimized with respect to productivity and has been demonstrated to work with most constructs, it is ready to be scaled up in stages from 1–2 mg up to 50 mg and larger.

Vernal is developing and qualifying a toolbox of testing methods. This includes assays that are not applied at the research level, because the relevant impurities are known to change at large scale and thus are only tested upon the initiation of process development, engineering, and GMP runs. They also include methods for the detection of impurities for special projects, such as tests for the presence of double-stranded RNA.

Meeting the Needs of mRNA Developers

The concerted QbD approach that drives Vernal Biosciences’ operations meets the needs of therapeutic developers for reliable and high-quality RNA supply. With our end-to-end service offering from cell banking and plasmid manufacturing capabilities to mRNA and LNP formulation, customers only need to partner with a single CDMO across the entire mRNA value chain for the life cycle of drug development. Vernal’s reliable platform processes, state-of-the-art equipment, and expertise in process development enable seamless scale-up, fast tracking your drug development by ensuring timely and stable supply of high-quality mRNA-based drug products. Vernal is one of the few CDMOs with manufacturing slots available for new projects, as demand for CDMO services in the mRNA technology sector surges to unprecedented levels and mRNA developers struggle to find manufacturing partners with sufficient available capacity.